Chuiqin/irgsea

Author: jloq

August undefined, 2024

WebAug 22, 2024 · Introduction. Acute pancreatitis (AP) is a clinically common critical and acute disease that occurs in approximately 13 million people worldwide every year ().With the exacerbation of alcohol abuse and obesity worldwide, the morbidity of …

Frontiers Novel insight on marker genes and pathogenic …

WebThe integration of single cell rank-based gene set enrichment analysis • irGSEA irGSEA Integrate all single cell rank-based gene set enrichment analysis and easy to visualize … WebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. top: The top gene sets. Default 50. show.geneset: A vector including special gene sets. Default NULL. ... flip analysis spreadsheet

irGSEA.density.scatterplot: Density Scatter plot in chuiqin/irGSEA: …

WebGrace Quan is a modern reconstruction of a Chinese-American shrimp fishing junk, similar to those in the fleet that operated in San Francisco Bay in the late 19th and early 20th … WebirGSEA.score.Rd Input a Seurat object or scRNA-seq matrix, calculate the enrichment scores of AUCell, UCell, singscore and ssgsea. Then, return a Seurat object including … WebOct 15, 2024 · devtools::install_github("chuiqin/irGSEA") 如果最后devtools::install_github有问题，欢迎学习使用yulabs.utils工具包。如果查下来还不会，欢迎私信交流。 greater than symbol in sql query

Single-cell sequencing reveals heterogeneity between pancreatic ...

WebJul 26, 2024 · chuiqin/irGSEA The integration of single cell rank-based gene set enrichment analysis Package index Search the chuiqin/irGSEA package Vignettes README.md Functions 21 Source code 3 Man pages 11 irGSEA.barplot: Stacked bar plot irGSEA.bubble: Bubble plot irGSEA.densityheatmap: Density heatmap WebJul 26, 2024 · chuiqin/irGSEA / irGSEA.halfvlnplot: Half vlnplot irGSEA.halfvlnplot: Half vlnplot In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/plot.R irGSEA.halfvlnplot R Documentation Half vlnplot Description Easy to show the data distribution by half vlnplot Usage flip analysis spreadsheet freeWebPostdoctoral Fellow, Luo Lab; Contact Info. Name flip analyzer

"WebSep 1, 2024 · Microglia-specific transcriptional repression of DNA repeats after chronic stress. (A) Genome distribution of down-regulated genes (down_genes, red vertical bars) and DNA repeats (blue vertical bars). " - Chuiqin/irgsea

Chuiqin/irgsea

irGSEA.score: Calculate enrichment scores from scRNA-seq data in ...

WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis 当然学习的时候如果觉得好用，也别忘点亮一颗星星支持作者，这也是R语言开源的魅力，我们作为使用者对于好用的工具应该给予肯定和支持 WebBy summer’s end, the team completed the construction of the 42-foot-long and 10-foot-wide replica. Grace Quan, named for Frank’s late mother Grace, was launched on Oct. 25, …

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WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis chuiqin / irGSEA Fork master 1 branch 1 tag chuiqin fix the bug of plot … WebJul 26, 2024 · In chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis. View source: R/plot.R. irGSEA.ridgeplot: R Documentation: Ridge plot Easy to show the data distribution by ridge plot Description. Ridge plot Easy to show the data distribution by ridge plot Usage

WebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment analysis. Meanwhile, you are easy to visualize the results. Getting started README.md Browse package contents Vignettes Man pages API and functions Files WebOct 27, 2024 · The prognosis of human papillomavirus (HPV)-infected head and neck squamous cell carcinoma (HNSCC) is often better than that of HPV ⁻ cancer, which is possibly caused by the differences in their ...

WebGitHub - chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis 当然学习的时候如果觉得好用，也别忘点亮一颗星星支持作者，这也是R语言开源的魅力，我们作为使用者对于好用的工具应该给予肯定和支持 WebNov 1, 2024 · Alternatively, cell-type enrichment analysis using the AUCell algorithm in irGSEA revealed the same results (Fig. 4 E–F). We also did cell deconvolution analysis to estimate the proportions of distinct microglia subpopulations in our bulk microglia RNA-seq in CO and ST groups and found a significant increase of “Homeostatic microglia” and ...

WebJul 26, 2024 · chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis The integration of single cell rank-based gene set enrichment …

WebMar 30, 2024 · The single-sample gene set enrichment analysis (ssGSEA) method was used to construct CAFs related score system CafS. Estimation of immune infiltration We used ssGSEA method and CIBERSORT algorithm ( Newman et al., 2015) to evaluated absolute abundance of multiple immune cell populations. greater than symbol in unixWebIn chuiqin/irGSEA: The integration of single cell rank-based gene set enrichment analysis View source: R/main.R irGSEA.score R Documentation Calculate enrichment scores … flip and a curl swf wild krattsWebStress-induced neuroinflammation is considered an important mechanism in the pathogenesis of depression. As immune effector cells in the brain, microglia play an essential role in ... flip anchorsWebA list after perform irGSEA.integrate. method: A character. It should be one of the followling : AUCell, UCell, singscore, ssgsea or RRA. Default RRA. upset.width: Width of the whole upset plot. Default 13. upset.height: ... Developed by Chuiqin Fan. Site built with ... greater than symbol in textWebOct 23, 2024 · GSEA的输入文件是一个表达矩阵，我们需要提前把样本进行分组，然后对所有基因基于分组来进行排序，那么这个时候我们最常使用的排序方式就是通过LogFC的大小来进行排序（从大到小），这种排序天生就具有了一种属性即可以表示两组间基因的表达量变化趋势，排序之后的基因列表其顶部可以看作是上调的差异基因，其底部可以看作是下调 … greater than symbol javaWebReleases · chuiqin/irGSEA. irGSEA 1.1.3. 08 Apr 08:15 . chuiqin. V1 c42f07f. Compare. Choose a tag to compare. Could not load tags. Nothing to show {{ refName }} default. View all tags. irGSEA 1.1.3 Latest. Latest. This version of irGSEA only supports AUCell, UCell, singscore and ssgsea. Assets 3. All reactions. flip and bailey\\u0027sWebJan 31, 2024 · Single cell RNA sequencing (scRNA-seq) provides a better understanding of cellular behavior in the context of complex tumor microenvironments by analyzing individual cell populations. Methods The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) data was employed to investigate the metabolic pathways in HCC. flip and a curl swf